Package index
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RPI() - Calculate Root Penetration Index
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RWDI() - Calculate Root Weight Depth Index
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TurnoverDPC_data - Root Turnover Analysis Data
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analyze_soil_texture() - Texture calculation
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binning() - Bin continuous depth values into discrete intervals
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circular_mean() - Calculate a circular mean to determine average Directionality
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clean_root_image() - Process root images by filling holes and optionally smoothing edges
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count_pixels() - counts all pixels in a segmented image
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create_depthmap() - Create A Phase-Shifted, Tilt-Amplitude Sine Depth Map
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create_root_buffer() - Create a buffer halo) around non-zero pixels
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deep_drive() - Calculate Deep Drive Estimate for Root Systems
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detect_skeleton_points() - Detect Skeleton Points: Branching Points and Endpoints
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estimate_rotation_center() - Estimates rotation from tape coverage
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estimate_rotation_shift() - Detect rotation shift between two images
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estimate_soil_surface() - Estimate soil surface position using tape markers
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fit_sine_curve() - Fit a sine curve using non-linear least squares
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image_threshold() - Threshold or deblur an image to binarize features
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modal_peaks() - Find Modal Peaks in a Density Estimation
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rgb2gray() - Convert RGB image to grayscale with optimized memory management and parallel processing
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rgb_Oulanka2023_Session03_T067 - Original Minirhizotron Root Scan - Session 3, Tube 67
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root_accumulation() - Calculate root accumulation
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root_diameter() - Estimate Root Diameters
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root_length() - Calculate Root Length using Kimura's Method with optimizations
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root_scape_metrics() - RootScapeMetric relies on Landscapemetrics to extract 'Root Scape' Features akin to landscape analysis.
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root_thickness() - Approximate average Root Thickness
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root_turnover() - Unified Root Turnover Analysis
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rotation_censor() - Censor image edges based on rotation
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seg_Oulanka2023_Session01_T067 - Segmented Minirhizotron Root Scan - Session 1, Tube 67
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seg_Oulanka2023_Session03_T067 - Segmented Minirhizotron Root Scan - Session 3, Tube 67
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skeletonize_image() - Skeletonization Wrapper Function
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skl_Oulanka2023_Session01_T067 - Skeletonized Root Scan - Session 1, Tube 67
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skl_Oulanka2023_Session03_T067 - Skeletonized Root Scan - Session 3, Tube 67
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tail_weighted_js_divergence() - Calculate tail-weighted Jensen-Shannon divergence
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tail_weighted_kl_divergence() - Calculate tail-weighted KL divergence for discrete distributions
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tail_weighted_wasserstein_distance() - A tailweighted Version of 1 dimensional Wasserstein distance betwwen two probability vectors
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tube_coloration() - Calculate Image Coloration Metrics
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zoning() - Zone Image Data by Depth and/or Rotation Slices with Optional Spatial Cropping