Skeletonized Root Scan - Session 3, Tube 67 — skl_Oulanka2023_Session03

Skeletonized root scan image from a sedge fen in northern Finland (October 2023). The image was processed using RootDetector for segmentation and skeletonization.

Usage

data(skl_Oulanka2023_Session03_T067)

Format

A RasterBrick object with dimensions:

4900 columns (width)
1161 rows (height)
3 layers (channels)

Source

Images by J.Cunow

Details

Binary mask representation where:

Root skeletons = 1
Background = 0
Layer 1 includes foreign objects (e.g., tape) marked as 1

Skeletonization reduces root width to single-pixel lines while preserving the root system topology.

Author

Johannes Cunow johannes.cunow@gmail.com

Examples

if (FALSE) { # \dontrun{
  data(skl_Oulanka2023_Session03_T067)
  skl_Oulanka2023_Session03_T067 = terra::rast(skl_Oulanka2023_Session03_T067)
  terra::plot(skl_Oulanka2023_Session03_T067)
} # }